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Genomics & Proteomics
HUPO Study Supports Reproducibility of MS-Based Proteomics Even as Most Labs Fail to ID Proteins PDF Print E-mail
Friday, 22 May 2009 09:42

A study published this week purports that mass spectrometry technology is robust and can achieve reproducible results, while at the same time suggesting that the skills of researchers using the machines may not match the technical abilities of the instruments.

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Fast, Affordable Tool for Finding Gene 'On-off' Switches PDF Print E-mail
Friday, 22 May 2009 09:26
UCSF scientists have created a method of quickly identifying large numbers of the genetic material known as short hairpin RNA — also called shRNA – that turns genes on and off.
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New Tool Helps Researchers Identify DNA Patterns of Cancer, Genetic Disorders PDF Print E-mail
Tuesday, 19 May 2009 14:14
A new tool will help researchers identify the minute changes in DNA patterns that lead to cancer, Huntington's disease and a host of other genetic disorders. The tool was developed at North Carolina State University and translates DNA sequences into graphic images, which allows researchers to distinguish genetic patterns more quickly and efficiently than was historically possible using computers.
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Researchers Identify Key Proteins Needed for Ovulation PDF Print E-mail
Friday, 15 May 2009 02:03

http://www.bcm.edu/cms_web/31/richards_photo.jpgStudy reveals essential step in female reproductive process.

Researchers from the National Institutes of Health and other institutions have identified in mice two proteins essential for ovulation to take place.

The finding has implications for treating infertility resulting from a failure of ovulation to occur as well as for developing new means to prevent pregnancy by preventing the release of the egg.

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Maybe Not Dogs, But Old Genes Can Learn New Tricks PDF Print E-mail
Thursday, 14 May 2009 00:56
http://www.bio.indiana.edu/facultyresearch/facultypics/Moczek_A2.jpgA popular view among evolutionary biologists that fundamental genes do not acquire new functions was challenged this week by a new study in the Proceedings of the National Academy of Sciences.

Indiana University Bloomington biologist Armin Moczek and research associate Debra Rose report that two ancient genes were "co-opted" to help build a new trait in beetles -- the fancy antlers that give horned beetles their name. The genes, Distal-less and homothorax, touch most aspects of insect larval development, and have therefore been considered off-limits to the evolution of new traits.
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Study: Genetics Involved in Gallstone Risk PDF Print E-mail
Wednesday, 13 May 2009 09:52

Although obesity and gallstones often go together, U.S. scientists say genetically modified mice fed high-fat food don't grow fat, but do develop gallstones.

Washington University School of Medicine researchers in St. Louis said they studied a strain of mice genetically engineered to lack a substance called liver fatty acid binding protein. The scientists compared the modified mice with their healthy, normal littermates.

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Study Finds Novel Genetic Risk Factors for Kidney Disease PDF Print E-mail
Monday, 11 May 2009 00:07

A team of researchers from the United States, the Netherlands and Iceland has identified three genes containing common mutations that are associated with altered kidney disease risk. One of the discovered genes, the UMOD gene, produces Tamm-Horsfall protein, the most common protein in the urine of healthy individuals. Although the Tamm-Horsfall protein has been known for almost 60 years, its functions are not well understood and its relationship to chronic kidney disease risk was not known previously. The findings are published in the May 10 issue of Nature Genetics.

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Protein-protein Interaction Explains Vision Loss in Genetic Diseases PDF Print E-mail
Sunday, 10 May 2009 23:09

The mystery of genetic disease is only partially solved with the identification of a mutated gene. Often, the pattern of disease – the features or disorders associated with it – varies in type and severity among those who are affected. Scientists, physicians and patients all ask why.

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Genes Found to Play a Role in Breast Cancer's Spread to the Brain PDF Print E-mail
Thursday, 07 May 2009 23:59

New research led by investigators at Memorial Sloan-Kettering Cancer Center (MSKCC) identifies three genes that specifically mediate the metastasis, or spread, of breast cancer to the brain and illuminates the mechanisms by which this spread occurs. The study was published online today in Nature.

According to the study, COX2 and HB-EGF -- genes that induce cancer cell mobility and invasiveness -- were found to be genetic mediators in the spread of breast cancer to the brain. A third gene, ST6GALNAC5, was shown to provide cancer cells with the capability of exiting the blood circulation and passing through the blood-brain barrier to enter the brain tissue.

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New Evidence Ties Gene to Alzheimer's PDF Print E-mail
Wednesday, 06 May 2009 12:40

Of dozens of candidates potentially involved in increasing a person's risk for the most common type of Alzheimer's disease that affects more than 5 million Americans over the age of 65, one gene that keeps grabbing Johns Hopkins researchers' attention makes a protein called neuroglobin.

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Fundamental Mechanism for Cell Organization Discovered PDF Print E-mail
Friday, 22 May 2009 09:36
Scientists have discovered that cells use a very simple phase transition -- similar to water vapor condensing into dew -- to assemble and localize subcellular structures that are involved in formation of the embryo.
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Proteomics: Finding the Key Ingredients of Disease PDF Print E-mail
Tuesday, 19 May 2009 17:43
The winner of the chilli cook-off, usually has a key secret ingredient, which is hard to identify. Similarly, many diseases have crucial proteins, which change the dynamics of cells from benign to deadly. New findings from an international collaboration, involving McGill University, the Research Institute of the McGill University Health Centre (MUHC) and the Human Proteome Organisation (HUPO) just made identifying these changes one step easier. Their findings published in Nature Methods, show how to improve protein analysis to tease out relevant potential disease-causing molecules.
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Even In Our Genome, Good Fences Make Good Neighbors PDF Print E-mail
Friday, 15 May 2009 02:16

Our genome is a patchwork of neighborhoods that couldn't be more different: Some areas are hustling and bustling with gene activity, while others are sparsely populated and in perpetual lock-down. Breaking down just a few of the molecular fences that separate them blurs the lines and leads to the inactivation of at least two tumor suppressor genes, according to researchers at the Salk Institute for Biological Studies.

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Gene Signature May Predict Patient Response to Therapy for Gastrointestinal Stromal Tumors PDF Print E-mail
Friday, 15 May 2009 01:38

Researchers at Fox Chase Cancer Center uncovered a genetic pattern that may help predict how gastrointestinal stromal tumor (GIST) patients respond to the targeted therapy imatinib mesylate (Gleevec). Moreover, their findings point to genes that could be suppressed in order to make these tumors respond more readily to imatinib.

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Darwin Would Have Loved DNA PDF Print E-mail
Thursday, 14 May 2009 00:53
If Darwin were to come back today, what would he think of the way that analysis of DNA sequences is playing an ever-increasing role in the way we study evolution? He would probably be absolutely delighted with molecular evolutionary genetics, for three reasons.
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Gene In Breast Cancer Pathway Identified PDF Print E-mail
Tuesday, 12 May 2009 23:13

Scientists at Albert Einstein College of Medicine of Yeshiva University have discovered how a gene crucial in triggering the spread of breast cancer is turned on and off. The findings could help predict whether breast tumors will metastasize and also reveal potential drug targets for preventing metastasis. The study will appear in the May 20th online edition of the Journal of Cell Science.

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New Genes Implicated in High Blood Pressure PDF Print E-mail
Sunday, 10 May 2009 23:21

http://www.hopkinsmedicine.org/bin/j/n/chakravarti.jpgResearchers at the Johns Hopkins University School of Medicine, along with an international team of collaborators, have identified common genetic changes associated with blood pressure and hypertension. The study, reporting online next week in Nature Genetics, breaks new ground in understanding blood pressure regulation and may lead to advances in hypertension therapy.

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Identification of Gene Behind Form of Congenital Anemia PDF Print E-mail
Friday, 08 May 2009 13:51

http://www.nouvelles.umontreal.ca/images/stories/003/2009/05/09-samuel-mark.jpgThe latest electronic edition of the journal Nature Genetics reports the discovery of a new gene responsible for congenital sideroblastic anemia, a rare disease, mainly characterized by the presence of ringed sideroblasts in the patients' bone marrow. This Genome Canada project, co-directed by Dr. Mark Samuels, an investigator with the Sainte-Justine University Hospital Research Center and a professor at the Université de Montréal Department of Medicine, is being conducted under the Atlantic Medical Genetics and Genomics Initiative (AMGGI)

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Random Picks Better than Complicated Process in Gene Identification PDF Print E-mail
Wednesday, 06 May 2009 12:59

Researchers at Purdue University have found a way to save time, money and a little frustration in searches for specific genes that shed light on the biological processes associated with all forms of life.

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Date Palm Genome Drafted PDF Print E-mail
Wednesday, 06 May 2009 08:53
Researchers at Weill Cornell Medical College in Qatar (WCMC-Q) have mapped a draft version of the date palm genome, unlocking many of its genetic secrets.
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