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Genomics & Proteomics
When You've Doubled Your Genes, What's One Chromosome More Or Less? How Polyploidy And Genomic Change Can Lead To Evolutionary Change PDF Print E-mail
Wednesday, 16 September 2009 10:54

An individual with Down syndrome and a male calico cat have one thing in common—each has an extra chromosome. For animals, most instances of an extra chromosome result in birth defects or even death, but plants are another matter entirely. Many plants are able to survive the presence of an extra copy of their entire genome (known as polyploidy) and are often even more vigorous as a result. For plants, the process of polyploidy often results in a new species, making it an important mechanism in evolution. In fact, over 80% of plants may be a product of polyploidy.

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Monitoring Illegal Wildlife Trade: DNA 'Barcodes' For 25 Hunted Wildlife Species Sequenced PDF Print E-mail
Wednesday, 16 September 2009 10:39

Researchers from several institutions including the University of Colorado at Boulder have sequenced DNA "barcodes" for as many as 25 hunted wildlife species, providing information that can be used to better monitor the elusive trade of wildlife products, or bushmeat.

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New Genomic Model Defines Microbes By Diet; Provides Tool For Tracking Environmental Change PDF Print E-mail
Saturday, 12 September 2009 11:42

In line with the U.S. Department of Energy (DOE) interest in characterizing the biotic factors involved in global carbon cycling, the DOE Joint Genome Institute (JGI) characterizes a diverse array of plants, microorganisms, and the communities in which they reside to inform options for reducing and stabilizing atmospheric greenhouse gases.

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Finding Of Genetic Region Controlling Cardiovascular Sensitivity To Anesthetic Propofol PDF Print E-mail
Saturday, 12 September 2009 11:21

Researchers at The Medical College of Wisconsin in Milwaukee have identified the genetic region in rats responsible for cardiovascular collapse during anesthesia. While it is well known that people have different cardiovascular sensitivity to anesthesia causing some to collapse even when low doses are administered, the mechanism responsible for this susceptibility is not clear.

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International Team Sequences Genome of Potato Blight Pathogen PDF Print E-mail
Friday, 11 September 2009 08:03
An international research team reported today in the advanced, online edition of Nature that they have sequenced the genome of a pathogenic water mold behind Ireland's 19th century potato famine. The team, led by researchers at the Broad Institute and the UK's Sainsbury Laboratory, used whole-genome shotgun sequencing to sequence the 240 million base genome of Phytophthora infestans. In the process, they identified clues about how the pathogen infiltrates and infects host plants. Based on their findings, the team suspects the pest can evolve by quickly shuffling infection-related genes in repeat-rich, gene-poor parts of the genome.
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Complete Genomics Sequences 14 Genomes PDF Print E-mail
Thursday, 10 September 2009 23:31
Complete Genomics has sequenced and analyzed 14 human genomes for customers since it began a limited trial launch in March, the company said today. The Mountain View, Calif.-based DNA sequencing services firm plans to scale up its technology and capabilities for a full commercial launch set for the beginning of 2010, a year in which the company plans to sequence 10,000 genomes.
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Subset of Prostate Cancer Risk Alleles Verified In Japanese GWAS PDF Print E-mail
Thursday, 10 September 2009 23:29
A new genome-wide association suggests that some — but not all — of the prostate cancer risk alleles detected in studies of European or African-American individuals are also risk variants in a Japanese population. The team of Japanese and American investigators evaluated more than 300 Japanese men with prostate cancer and 1,000 healthy controls, testing for 23 SNPs that had been previously linked to prostate cancer risk, age of onset, or aggressiveness in other populations. In a paper appearing online this week in the Journal of the National Cancer Institute, they reported that almost a third of those SNPs also were associated with prostate cancer in the Japanese population.
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Danaher to Pick Up Molecular Devices' Array Scanner Portfolio as Part of MDS Analytical Tech Buy PDF Print E-mail
Friday, 04 September 2009 03:04

Danaher’s impending acquisition of MDS’ Analytical Technologies division will include ownership of MDS' Molecular Devices business, which in turn sells a line of Axon GenePix scanners that are widely used by microarray users. These products include the Axon GenePix 4400A, which can generate images with 2.5-micron resolution using four lasers, and the 4300A, which can generate images with up to 5-micron resolution using four laser scanners. Both scanners were launched last year (see BAN 5/13/2008).

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Protein Modifier SUMO Helps Set Apart Females And Males PDF Print E-mail
Wednesday, 02 September 2009 02:30

One way in which men and women differ is in their expression of liver proteins that control a large number of whole-body processes such as energy generation and lipid and steroid hormone production and turnover. Now, Walter Wahli and colleagues, at the University of Lausanne, Switzerland, have identified a new mechanism underlying this differential expression of proteins in male and female mice. The research appears in the Sept. 1, 2009 issue of the Journal of Clinical Investigation.

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Dynamic Changes In DNA Linked To Human Diabetes PDF Print E-mail
Wednesday, 02 September 2009 01:44

A study in the September issue of Cell Metabolism, a Cell Press publication, may give new meaning to the adage "You are what you eat." The DNA isolated from the muscles of people with diabetes bears chemical marks not found in those who respond normally to rising blood sugar levels, according to the report. The epigenetic marks in question are specifically found on a gene that controls the amount of fuel, in the form of glucose or lipids, that cells burn. Those marks also show up in the skeletal muscle of people with prediabetes, suggesting that the DNA modification might be an early event in the development of the disease.

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Possible Genetic Factor For Male Infertility Identified PDF Print E-mail
Wednesday, 16 September 2009 10:51

Virginia Commonwealth University School of Medicine researchers have discovered a gene involved with the production of sperm that may contribute to male infertility and lead to new approaches to male contraception. One in six couples trying to conceive a baby is affected by infertility, according to the American Fertility Association – and in about half of these cases, a male factor is present. Sperm defects are often found to be the main cause or a contributing cause.

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Scientists Discover What Makes The Same Type Of Cells Different PDF Print E-mail
Monday, 14 September 2009 08:57

A research team led by Lucas Pelkmans at ETH Zürich has managed to decipher a well-known phenomenon that had, until now, remained unexplained: why cells of the same type can react differently, and what the reason for this is. The properties of a cell population determine the different cell activities observed in cells of the same type. This is the conclusion drawn by a research team lead by Lucas Pelkmans, professor at the Institute for Molecular Systems Biology at ETH Zürich. The scientists examined the cause of the well-known phenomenon of cell heterogeneity. Until now, the reasons behind the different reactions seen in cells of the same type had not been scrutinised.

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Genome Sequencing Reveals Genetic Diversity Of Bacteria That Cause Buruli Ulcer PDF Print E-mail
Saturday, 12 September 2009 11:34

A new study lays the groundwork for development of a cost-effective tool for studying the population structure and spread of Mycobacterium ulcerans, the causative agent of Buruli ulcer. Researchers at the Swiss Tropical Institute, Basel, Switzerland, and the Noguchi Memorial Institute for Medical Research, Legon, Ghana, developed SNP typing assays to systematically profile genetic diversity among M. ulcerans isolates by sequencing and comparing the genomes of selected strains.

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Two Genes Identified As Potential Therapeutic Targets For Multiple Sclerosis PDF Print E-mail
Friday, 11 September 2009 08:45

A Mayo Clinic study has found that two genes in mice were associated with good central nervous system repair in multiple sclerosis (MS). These findings give researchers new hope for developing more effective therapies for patients with MS and for predicting MS patients' outcomes. This study will be presented at the Congress of the European Committee for Treatment and Research in Multiple Sclerosis in Dusseldorf, Germany, on Sept. 11, 2009.

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UK Genetics Group Issues 'Principles' for DTC Testing PDF Print E-mail
Thursday, 10 September 2009 23:32
The UK's Human Genetics Commission on Tuesday issued a set of principles for direct-to-consumer genetic testing that were drafted to provide guidance for consumers and to "promote high standards and consistency" among companies offering these tests. DTC genetic testing "has increased dramatically over the last 10 years" and needs internationally accepted guidelines, HGC said. The HGC principles center on the information and counseling consumers are provided before and after taking tests and on privacy considerations. They apply to all aspects of the industry, including marketing and advertising, consumer consent, lab analysis, and support for consumers.
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Proteostasis Therapeutics Licenses GeneGo's MetaCore PDF Print E-mail
Thursday, 10 September 2009 23:30
GeneGo said today that Proteostasis Therapeutics has licensed its MetaCore curated data mining and analysis platform. Proteostasis Therapeutics is developing small molecule therapeutics based on studies of the human proteostasis network, the balance of proteins that can protect the body from diseases, GeneGo said. Deficiencies in that network can lead to a range of diseases, such as emphysema, type II diabetes, Alzheimer's disease, and Huntington's disease, said GeneGo.
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Discovery Of Gene That Protects High-Fat-Diet Mice From Obesity PDF Print E-mail
Friday, 04 September 2009 03:41
University of Michigan researchers have identified a gene that acts as a master switch to control obesity in mice. When the switch is turned off, even high-fat-diet mice remain thin. Deleting the gene, called IKKE, also appears to protect mice against conditions that, in humans, lead to Type 2 diabetes, which is associated with obesity and is on the rise among Americans, including children and adolescents.
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Illumina Announces Delivery Of The First Genome Through Its Individual Genome Sequencing Service PDF Print E-mail
Wednesday, 02 September 2009 02:38

Illumina, Inc. (NASDAQ:ILMN) announced that it has delivered Hermann Hauser's genome sequence. Dr. Hauser, Partner, Amadeus Capital Partners Ltd, is the first consumer to purchase Illumina's individual genome sequencing service working with his physician, Michael Nova, MD, of Pathway Genomics. The genome was completed in Illumina's CLIA-certified and College of American Pathologists (CAP) accredited laboratory using the Genome Analyzer technology.

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Gene Contributes To Two Different, Common Neurological Movement Disorders PDF Print E-mail
Wednesday, 02 September 2009 02:20

Researchers at the Mayo Clinic campus in Florida and their collaborators worldwide have discovered that a single gene promotes development of essential tremor in some patients and Parkinson's disease in others. These are two common but distinct neurological disorders. Notably, patients with essential tremor shake when they move, and Parkinson's disease patients shake when they are at rest.

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Systems Biology Provides Clues to Bacteria with Bioremediation Potential PDF Print E-mail
Tuesday, 01 September 2009 22:21
An American research team has taken a systems biology approach to understanding the diversity found in Shewanella — a bacterial genus touted for its bioremediation potential.The researchers brought together genomic, proteomic, and physiological data for ten Shewanella strains in order to get a better sense of how genotype relates to phenotype. The work, scheduled to appear online this week in the Proceedings of the National Academy of Sciences, suggests relationships between the strains are more complicated than previously appreciated, with related strains not necessarily sharing the same functions.
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